1.
Jonas
S
,
Izaurralde
E
. Towards a molecular understanding of
microRNA-mediated gene silencing . Nat Rev
Genet.
2015; ; 16 :
:421.–433.
2.
Lodge
R
,
Ferreira Barbosa
JA
,
Lombard-Vadnais
F
, et al.
Host microRNAs-221 and -222 inhibit hiv-1 entry in macrophages by
targeting the CD4 viral receptor . Cell Rep.
2017; ; 21 :
:141.–153.
3.
Ingle
H,
Kumar
S,
Raut
AA, et al.
The microRNA miR-485 targets host and influenza virus transcripts
to regulate antiviral immunity and restrict viral
replication . Sci Signal.
2015;; 8 : :ra126..
4.
Santhakumar
D
,
Forster
T
,
Laqtom
NN
, et al.
Combined agonist-antagonist genome-wide functional screening
identifies broadly active antiviral microRNAs . Proc
Natl Acad Sci USA.
2010; ; 107 :
:13830.–13835.
5.
Lewis
BP
,
Shih
I
,
Jones-Rhoades
MW
, et al.
Prediction of mammalian microRNA targets .
Cell.
2003; ; 115 :
:787.–798.
6.
Lewis
BP
,
Burge
CB
,
Bartel
DP
. Conserved seed pairing, often flanked by
adenosines, indicates that thousands of human genes are microRNA
targets . Cell.
2005; ; 120 :
:15.–20.
7.
John
B
,
Enright
AJ
,
Aravin
A
, et al.
Human microRNA targets . PLoS
Biol.
2004; ; 2 : :e363..
8.
Krek
A
,
Grun
D
,
Poy
MN
, et al.
Combinatorial microRNA target predictions .
Nat Genet.
2005; ; 37 :
:495.–500.
9.
Kiriakidou
M
,
Nelson
PT
,
Kouranov
A
, et al.
A combined computational-experimental approach predicts human
microRNA targets . Genes Dev.
2004; ; 18 : (18):
:1165.–1178.
10.
Hsu
PW-C,
Lin
L-Z,
Hsu
S-D, et al.
ViTa: prediction of host microRNAs targets on
viruses . Nucleic Acids Res.
2007;; 35 :
:D381.–5.
11.
Pinzón
N
,
Li
B
,
Martinez
L
, et al.
microRNA target prediction programs predict many false
positives . Genome Res.
2017; ; 27 :
:234.–245.
12.
Dölken
L
,
Malterer
G
,
Erhard
F
, et al.
Systematic analysis of viral and cellular microRNA targets in
cells latently infected with human gamma-herpesviruses by RISC
immunoprecipitation assay . Cell Host
Microbe.
2010; ; 7 :
:324.–334.
13.
Chi
SW
,
Zang
JB
,
Mele
A
, et al.
Argonaute HITS-CLIP decodes microRNA–mRNA interaction
maps . Nature.
2009; ; 460 :
:479.–486.
14.
Hafner
M
,
Landthaler
M
,
Burger
L
, et al.
Transcriptome-wide identification of RNA-binding protein and
microRNA target sites by PAR-CLIP . Cell.
2010; ; 141 :
:129.–141.
15.
Jopling
CL
,
Yi
M
,
Lancaster
AM
, et al.
Modulation of hepatitis C virus RNA abundance by a liver-specific
MicroRNA . Science.
2005; ; 309 :
:1577.–1581.
16.
Henke
JI
,
Goergen
D
,
Zheng
J
, et al.
microRNA-122 stimulates translation of hepatitis C virus
RNA . EMBO J.
2008; ; 27 :
:3300.–3310.
17.
Mengardi
C
,
Ohlmann
T
. miR-122 continue de nous
surprendre . Med Sci (Paris).
2015; ; 31 :
:612.–615.
18.
Li
Y
,
Yamane
D
,
Lemon
SM
. Dissecting the roles of the 5’exoribonucleases
Xrn1 and Xrn2 in restricting hepatitis C virus replication .
J Virol.
2015; ; 89 :
:4857.–4865.
19.
Gao
L
,
Guo
XK
,
Wang
L
, et al.
MicroRNA 181 suppresses porcine reproductive and respiratory
syndrome virus (PRRSV) infection by targeting PRRSV receptor
CD163 . J Virol.
2013; ; 87 :
:8808.–8812.
20.
Chen
Z
,
Ye
J
,
Ashraf
U
, et al.
MicroRNA-33a-5p Modulates japanese encephalitis virus replication
by targeting eukaryotic translation elongation factor 1A1 .
J Virol.
2016; ; 90 :
:3722.–3734.
21.
Ho
BC
,
Yu
SL
,
Chen
JJW
, et al.
Enterovirus-induced miR-141 contributes to shutoff of host
protein translation by targeting the translation initiation factor
eIF4E . Cell Host Microbe.
2011; ; 9 :
:58.–69.
22.
Taganov
KD
,
Boldin
MP
,
Baltimore
D
. MicroRNAs and immunity: tiny players in a big
field . Immunity.
2007; ; 26 :
:133.–137.
23.
Rosenberger
CM
,
Podyminogin
RL
,
Diercks
AH
, et al.
miR-144 attenuates the host response to influenza virus by
targeting the TRAF6-IRF7 signaling axis . PLoS
Pathog.
2017; ; 13 :
:e1006305..
24.
Backes
S
,
Shapiro
JS
,
Sabin
LR
, et al.
Degradation of host microRNAs by Poxvirus poly(A) polymerase
reveals terminal RNA methylation as a protective antiviral
mechanism . Cell Host Microbe.
2012; ; 12 :
:200.–210.
25.
Buck
AH
,
Perot
J
,
Chisholm
MA
, et al.
Post-transcriptional regulation of miR-27 in murine
cytomegalovirus infection . RNA.
2010; ; 16 :
:307.–315.
26.
Libri
V
,
Helwak
A
,
Miesen
P
, et al.
Murine cytomegalovirus encodes a miR-27 inhibitor disguised as a
target . Proc Natl Acad Sci USA.
2012; ; 109 :
:279.–284.
27.
Marcinowski
L
,
Tanguy
M
,
Krmpotic
A
, et al.
Degradation of cellular mir-27 by a novel, highly abundant viral
transcript is important for efficient virus replication in
vivo . PLoS Pathog.
2012; ; 8 :
:e1002510..
28.
Ameres
SL
,
Horwich
MD
,
Hung
JH
, et al.
Target RNA-directed trimming and tailing of small silencing
RNAs . Science.
2010; ; 328 :
:1534.–1539.
29.
Chakraborty
C
,
Sharma
AR
,
Sharma
G
, et al.
Therapeutic miRNA and siRNA: Moving from bench to clinic as next
generation medicine . Mol Ther Nucleic Acids.
2017; ; 8 :
:132.–143.
30.
Peng
S
,
Wang
J
,
Wei
S
, et al.
Endogenous cellular microRNAs mediate antiviral defense against
influenza A virus . Mol Ther Nucleic Acids.
2018; ; 10 :
:361.–375.
31.
Janssen
HLA
,
Reesink
HW
,
Lawitz
EJ
, et al.
Treatment of HCV infection by targeting microRNA .
N Engl J Med.
2013; ; 368 :
:1685.–1694.
32.
van der Ree
MH
,
van der Meer
AJ
,
de Bruijne
J
, et al.
Long-term safety and efficacy of microRNA-targeted therapy in
chronic hepatitis C patients . Antiviral Res.
2014; ; 111 :
:53.–59.
33.
van der Ree
MH
,
de Vree
JM
,
Stelma
F
, et al.
Safety, tolerability, and antiviral effect of RG-101 in patients
with chronic hepatitis C: a phase 1B, double-blind, randomised controlled
trial . Lancet.
2017; ; 389 :
:709.–717.
34.
Waring
BM
,
Sjaastad
LE
,
Fiege
JK
, et al.
MicroRNA-based attenuation of influenza virus across susceptible
hosts . J Virol.
2017; ; 92 :
:e01741.–e01717.
35.
Kaufman
HL
,
Kohlhapp
FJ
,
Zloza
A
. Oncolytic viruses: a new class of immunotherapy
drugs . Nat Rev Drug Discov.
2015; ; 14 :
:642.–662.
36.
Kelly
EJ
,
Hadac
EM
,
Greiner
S
, et al.
Engineering microRNA responsiveness to decrease virus
pathogenicity . Nat Med.
2008; ; 14 :
:1278.–1283.
37.
Bogerd
HP
,
Skalsky
RL
,
Kennedy
EM
, et al.
Replication of many human viruses is refractory to inhibition by
endogenous cellular microRNAs . J Virol.
2014; ; 88 :
:8065.–8076.
38.
Scheel
TKH
,
Luna
JM
,
Liniger
M
, et al.
A broad RNA virus survey reveals both miRNA dependence and
functional sequestration . Cell Host Microbe.
2016; ; 19 :
:409.–423.
39.
Kincaid
RP
,
Sullivan
CS
. Virus-encoded microRNAs: an overview and a look
to the future . PLoS Pathog.
2012; ; 8 :
:e1003018..
40.
Sedano
CD
,
Sarnow
P
. Hepatitis C virus subverts liver-specific miR-122
to protect the viral genome from exoribonuclease Xrn2 .
Cell Host Microbe.
2014; ; 16 :
:257.–264.
41.
Masaki
T
,
Arend
KC
,
Li
Y
, et al.
miR-122 Stimulates hepatitis C virus RNA synthesis by altering
the balance of viral RNAs engaged in replication versus
translation . Cell Host Microbe.
2015; ; 17 :
:217.–228.
42.
Lanford
RE
,
Hildebrandt-Eriksen
ES
,
Petri
A
, et al.
Therapeutic silencing of microRNA-122 in primates with chronic
hepatitis C virus infection . Science.
2010; ; 327 :
:198.–201.
43.
Trobaugh
DW
,
Gardner
CL
,
Sun
C
, et al.
RNA viruses can hijack vertebrate microRNAs to suppress innate
immunity . Nature.
2014; ; 506 :
:245.–248.
44.
Hazra
B,
Kumawat
KL,
Basu
A. The host microRNA
miR-301a blocks the IRF1-mediated neuronal innate immune response to
Japanese encephalitis virus infection . Sci
Signal.
2017;; 10 :
:eaaf5185..
45.
Stewart
CR
,
Marsh
GA
,
Jenkins
KA
, et al.
Promotion of Hendra virus replication by microRNA
146a . J Virol.
2013; ; 87 :
:3782.–3791.
46.
Otsuka
M
,
Jing
Q
,
Georgel
P
, et al.
Hypersusceptibility to vesicular stomatitis virus infection in
Dicer1-deficient mice is due to impaired miR24 and miR93
expression . Immunity.
2007; ; 27 :
:123.–134.
47.
Guo
X-k.
, Zhang
Q,
Gao
L, et al.
Increasing expression of microRNA 181 inhibits porcine
reproductive and respiratory syndrome virus replication and has implications
for controlling virus infection . J Virol.
2013; ; 87 :
:1159.–1171.
48.
Li
L,
Gao
F,
Jiang
Y, et al.
Cellular miR-130b inhibits replication of porcine reproductive
and respiratory syndrome virus in vitro and in vivo .
Sci Rep.
2015;; 5.
49.
McCaskill
JL
,
Ressel
S
,
Alber
A
, et al.
Broad-spectrum inhibition of respiratory virus infection by
microRNA mimics targeting p38 MAPK signaling . Mol
Ther Nucleic Acids.
2017; ; 7 :
:256.–266.
50.
Wu
N
,
Gao
N
,
Fan
D
, et al.
miR-223 inhibits dengue virus replication by negatively
regulating the microtubule-destabilizing protein STMN1 in EAhy926
cells . Microbes Infect.
2014; ; 16 :
:911.–922.
51.
Chen
Z
,
Ye
J
,
Ashraf
U
, et al.
MicroRNA-33a-5p Modulates japanese encephalitis virus replication
by targeting eukaryotic translation elongation factor 1A1 .
J Virol.
2016; ; 90 :
:3722.–3734.
52.
Smith
JL
,
Jeng
S
,
McWeeney
SK
, et al.
A microRNA screen identifies the Wnt signaling pathway as a
regulator of the interferon response during flavivirus
infection . J Virol.
2017; ; 91 :
:e02388.–e02316.
53.
Diosa-Toro
M
,
Echavarría-Consuegra
L
,
Flipse
J
, et al.
MicroRNA profiling of human primary macrophages exposed to dengue
virus identifies miRNA-3614-5p as antiviral and regulator of ADAR1
expression . PLoS Neg Trop Dis.
2017; ; 11 :
:e0005981..
54.
Li
Q,
Lowey
B,
Sodroski
C, et al.
Cellular microRNA networks regulate host dependency of hepatitis
C virus infection . Nat Comm.
2017;; 8.
55.
Song
L
,
Liu
H
,
Gao
S
, et al.
Cellular MicroRNAs Inhibit replication of the H1N1 influenza a
virus in infected cells . J Virol.
2010; ; 84 :
:8849.–8860.
56.
Slonchak
A
,
Shannon
RP
,
Pali
G
, et al.
Human microRNA miR-532-5p exhibits antiviral activity against
West Nile virus via suppression of host genes SESTD1 and TAB3 required for
virus replication . J Virol.
2016; ; 90 :
:2388.–2402.
57.
Smith
JL
,
Grey
FE
,
Uhrlaub
JL
, et al.
Induction of the cellular microRNA, Hs_154, by West Nile virus
contributes to virus-mediated apoptosis through repression of antiapoptotic
factors . J Virol.
2012; ; 86 :
:5278.–5287.
58.
Shim
BS
,
Wu
W
,
Kyriakis
CS
, et al.
MicroRNA-555 has potent antiviral properties against
poliovirus . J Gen Virol.
2016; ; 97 :
:659.–668.
59.
Wang
P
,
Hou
J
,
Lin
L
, et al.
Inducible microRNA-155 Feedback promotes type I IFN signaling in
antiviral innate immunity by targeting suppressor of cytokine signaling
1 . J Immunol.
2010; ; 185 :
:6226.–6233.
60.
Tang
WF
,
Huang
RT
,
Chien
KY
, et al.
Host microRNA miR-197 plays a negative regulatory role in the
enterovirus 71 infectious cycle by targeting the RAN
protein . J Virol.
2016; ; 90 :
:1424.–1438.